miRBase entry: osa-MIR11342

Stem-loop osa-MIR11342


Accession
MI0036493
Description
Oryza sativa osa-MIR11342 precursor miRNA


Sequence

595 reads, 317 reads per million, 2 experiments
uccgggcuauuaaauagcccuccgaaaucuugcuauuuagcaguauuaaacguagauuaccgacaaaacucauuccauaaccccugggcuauuuugCGAGACGAAUCUAACGAGAUAuauuaauccaugauuuguugcagugaugcuacauugaucauucgcuaacuauggauuaauauacCUCGUUAGAUUCGUCUCGCAAAauagccuagggguuauggaauggguuuugucaguaaucuacguuuaauacucuuagauagcaagauuuuggagagcuauuuaauagcccg
..((((((((((((((((.(((((((((((((((((((((.(((((((((((((((((((.(((((((((((((((((((((((((((((((((((((((((((((((((((((.((((((((((((((....(((((((((((.(......))))))).)).))))))))))))))))).))))))))))))))))))))))))))))))))))))))))))))))))))))).))))))))))))))))))).))))))))))))))))))))).))))))))))))))))

Structure
uc                c                     c                   c                                                     A              auuu   -  -      g ua 
  cgggcuauuaaauagc cuccgaaaucuugcuauuuag aguauuaaacguagauuac gacaaaacucauuccauaaccccugggcuauuuugCGAGACGAAUCUAACGAG UAuauuaauccaug    guu gc agugau c  c
  |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    ||| || |||||| |   
  gcccgauaauuuaucg gagguuuuagaacgauagauu ucauaauuugcaucuaaug cuguuuuggguaagguauuggggauccgauaAAACGCUCUGCUUAGAUUGCUC auauaauuagguau    caa cg uuacua g  a
--                a                     c                   a                                                     c              ----   u  c      - uu 


Annotation confidence Low
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Genome context
Chr11: 23289221-23289513 [-]

Database links

Mature osa-miR11342-5p

Accession MIMAT0044638
Description Oryza sativa osa-miR11342-5p mature miRNA
Sequence 97 - CGAGACGAAUCUAACGAGAUA - 117
Evidence experimental
Illumina [1]

Mature osa-miR11342-3p

Accession MIMAT0044639
Description Oryza sativa osa-miR11342-3p mature miRNA
Sequence 182 - CUCGUUAGAUUCGUCUCGCAAA - 203
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26083154
    MicroRNA-mediated regulation of gene expression in the response of rice plants to fungal elicitors
    "Baldrich P, Campo S, Wu MT, Liu TT, Hsing YI, San Segundo B"
    "RNA Biol (2015) 12:847-863