miRBase entry: osa-MIR11343

Stem-loop osa-MIR11343


Accession
MI0036494
Description
Oryza sativa osa-MIR11343 precursor miRNA


Sequence

519 reads, 337 reads per million, 2 experiments
ucuccguuucauacuauagaCUUUCUAGCGUUGCCCACAUUcauauauguguuaaugaaucuagauauauaugugugccuagaugaaucuauaUGAAUGUGGGCAAUGUUAAAAagucuuauaaucugaaauagagg
.(((.((((((...((((((((((.((((((((((((((((((((((.((........((((((.((((....)))).))))))..)).)))))))))))))))))))))).)))))).))))...)))))).))).

Structure
u   c      uac    -      C                      u  guuaauga      a    u 
 cuc guuuca   uaua gaCUUU UAGCGUUGCCCACAUUcauaua gu        aucuag uaua a
 ||| ||||||   |||| |||||| |||||||||||||||||||||| ||        |||||| ||||  
 gag uaaagu   auau cugaAA AUUGUAACGGGUGUAAGUauau ua        uagauc gugu u
g   a      cua    u      A                      c  ------ag      c    g 


Annotation confidence Low
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Genome context
Chr12: 16169048-16169184 [-]

Database links

Mature osa-miR11343-5p

Accession MIMAT0044640
Description Oryza sativa osa-miR11343-5p mature miRNA
Sequence 21 - CUUUCUAGCGUUGCCCACAUU - 41
Evidence experimental
Illumina [1]

Mature osa-miR11343-3p

Accession MIMAT0044641
Description Oryza sativa osa-miR11343-3p mature miRNA
Sequence 94 - UGAAUGUGGGCAAUGUUAAAA - 114
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26083154
    MicroRNA-mediated regulation of gene expression in the response of rice plants to fungal elicitors
    "Baldrich P, Campo S, Wu MT, Liu TT, Hsing YI, San Segundo B"
    "RNA Biol (2015) 12:847-863