miRBase entry: osa-MIR5801c

Stem-loop osa-MIR5801c


Accession
MI0036497
Description
Oryza sativa osa-MIR5801c precursor miRNA


Sequence

112 reads, 86 reads per million, 2 experiments
agauuuucuccgguccagcaaaaaguaccucgagguaccgguacauuacgguacugaAUCGUUUCCGAUCGUUGGAUCuagcuggacaguauggacauuguUAGAUCCAACAAUCGAAAACGauuugguaccgugagguaccgguaccucgagguacuuuuuauuggacuauagcaaaucu
((((((.((..(((((((.(((((((((((((((((((((((((.(((((((((((((((((((.((((.((((((((((((((..((...))..))..)))))))))))).)))).))))))))))))))))))).))))))))))))))))))))))))).)))))))..)).))))))

Structure
      u  cc       c                         a                   C    C            --  ga  g 
agauuu cu  gguccag aaaaaguaccucgagguaccgguac uuacgguacugaAUCGUUU CGAU GUUGGAUCuagc  ug  ca  
|||||| ||  ||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||  ||  || u
ucuaaa ga  ucagguu uuuuucauggagcuccauggccaug agugccaugguuuaGCAAA GCUA CAACCUAGAUug  ac  gu  
      c  ua       a                         g                   A    A            uu  ag  a 


Annotation confidence Low
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Genome context
Chr8: 20930416-20930596 [+]

Database links

Mature osa-miR5801c-5p

Accession MIMAT0044646
Description Oryza sativa osa-miR5801c-5p mature miRNA
Sequence 58 - AUCGUUUCCGAUCGUUGGAUC - 78
Evidence experimental
Illumina [1]

Mature osa-miR5801c-3p

Accession MIMAT0044647
Description Oryza sativa osa-miR5801c-3p mature miRNA
Sequence 102 - UAGAUCCAACAAUCGAAAACG - 122
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26083154
    MicroRNA-mediated regulation of gene expression in the response of rice plants to fungal elicitors
    "Baldrich P, Campo S, Wu MT, Liu TT, Hsing YI, San Segundo B"
    "RNA Biol (2015) 12:847-863