miRBase entry: esi-MIR3455b

Stem-loop esi-MIR3455b


Accession
MI0036517
Description
Ectocarpus siliculosus esi-MIR3455b precursor miRNA


Sequence

ggccaUCAUCCUCAGGUUCCACCGGAgauugaacuccagccaagccgagagcuugcucgaguuucaaccucCGGUGGAACUUGAGGACGGUGgcca
(((((((.(((((((((((((((((((.((((((((.(((.((((.....))))))).))).))))).))))))))))))))))))).))))))).

Structure
-       A                   a     -   c   c    c 
 ggccaUC UCCUCAGGUUCCACCGGAg uugaa cuc agc aagc g
 ||||||| ||||||||||||||||||| ||||| ||| ||| |||| a
 ccgGUGG AGGAGUUCAAGGUGGCcuc aacuu gag ucg uucg g
a       C                   c     u   c   -    a 


Annotation confidence Not enough data
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Genome context
sctg_176: 136784-136879 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from esi-MIR3455b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature esi-miR3455b-5p

Accession MIMAT0044650
Description Ectocarpus siliculosus esi-miR3455b-5p mature miRNA
Sequence 6 - UCAUCCUCAGGUUCCACCGGA - 26
Evidence experimental
Illumina [1]

Mature esi-miR3455b-3p

Accession MIMAT0044651
Description Ectocarpus siliculosus esi-miR3455b-3p mature miRNA
Sequence 72 - CGGUGGAACUUGAGGACGGUG - 92
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26101255
    microRNAs and the evolution of complex multicellularity: identification of a large, diverse complement of microRNAs in the brown alga Ectocarpus
    "Tarver JE, Cormier A, Pinzon N, Taylor RS, Carre W, Strittmatter M, Seitz H, Coelho SM, Cock JM"
    "Nucleic Acids Res (2015) 43:6384-6398