miRBase entry: pab-MIR156p

Stem-loop pab-MIR156p


Accession
MI0036575
Description
Picea abies pab-MIR156p precursor miRNA

Literature search
2 open access papers mention pab-MIR156p
(7 sentences)

Sequence

uauguguuuuuuucucagucuaauuaacuugcggguauguguucacguaaugguggaaagcagaagaaggugaucauguugUUGACAGAAGAUAGAGGGCACaug
((((((((((((((((.(((....((((((((.....(((.(((((......)))))..))).......))))....))))..))).).))).))))))))))))

Structure
            -   - a   uaau    ----    --gggua   -g     gu 
uauguguuuuuu ucu c guc    uaac    uugc       ugu  uucac  a
|||||||||||| ||| | |||    ||||    ||||       |||  |||||   
guaCACGGGAGA AGA G CAG    guug    agug       acg  aggug  a
            U   A A   --UU    uacu    gaagaag   aa     gu 


Annotation confidence Not enough data
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Genome context
MA_733025: 1023-1127 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from pab-MIR156p
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pab-miR156p

Accession MIMAT0044673
Description Picea abies pab-miR156p mature miRNA
Sequence 82 - UUGACAGAAGAUAGAGGGCAC - 102
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26318183
    Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
    "Xia R, Xu J, Arikit S, Meyers BC"
    "Mol Biol Evol (2015) 32:2905-2918