miRBase entry: pab-MIR156q

Stem-loop pab-MIR156q


Accession
MI0036576
Description
Picea abies pab-MIR156q precursor miRNA

Literature search
2 open access papers mention pab-MIR156q
(7 sentences)

Sequence

cagagaaucugcaauugagggacaugugccuucuaucuucugccagcccaucacgcuucaccuucacaucuaaauuguuauuuucgaaagcagaagaaggugauuauguugUUGACAGAAGAUAGAGGGCACaugcgcuuacuuucagagaaucug
((((...((((.((.((((.(.((((((((((((((((((((.((((....((....((((((((...(((...(((.......)))....))).))))))))...))..)))).))))))))))))))))))))).)))).)).))))...))))

Structure
    gaa    c  u    g a                    c    ccau  cgcu        aca   -aaa   uu 
caga   ucug aa ugag g caugugccuucuaucuucug cagc    ca    ucaccuuc   ucu    uug  a
||||   |||| || |||| | |||||||||||||||||||| ||||    ||    ||||||||   |||    |||  u
gucu   agac uu auuc c guaCACGGGAGAUAGAAGAC GUUg    gu    aguggaag   aga    agc  u
    aag    u  c    g -                    A    --uu  -auu        --a   cgaa   uu 


Annotation confidence Not enough data
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Genome context
MA_733025: 1138-1293 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from pab-MIR156q
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pab-miR156q

Accession MIMAT0044674
Description Picea abies pab-miR156q mature miRNA
Sequence 112 - UUGACAGAAGAUAGAGGGCAC - 132
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26318183
    Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
    "Xia R, Xu J, Arikit S, Meyers BC"
    "Mol Biol Evol (2015) 32:2905-2918