miRBase entry: pab-MIR159e

Stem-loop pab-MIR159e


Accession
MI0036591
Description
Picea abies pab-MIR159e precursor miRNA

Literature search
2 open access papers mention pab-MIR159e
(6 sentences)

Sequence

gggugcucacuucaguccaaccagggguuguauggggaugauucaacuacugguucauggauucuauugucuugucauguugguggagcuagaaauauaauggugugcaugagacaggagguguauuuccaccaugcgacuuuuaCUUGGAUUCAAGGGAGCUCCU
(((.((((.(((.(((((((..((((((((((((((((.(((.((.((.(((..(((((.((.(((((((....((..(((.....)))..))...))))))).)).)))))..))).)).)).)))))).)))))))))))))..))))))).))).)))).)))

Structure
   u    a   c       cc             -   u   u  a  a   gu     g  u       cuug  au   g 
ggg gcuc cuu aguccaa  agggguuguaugg gga gau ca cu cug  ucaug au cuauugu    uc  guu g
||| |||| ||| |||||||  ||||||||||||| ||| ||| || || |||  ||||| || |||||||    ||  ||| u
UCC CGAG GAA UUAGGUU  uuuucagcguacc ccu uua gu ga gac  aguac ug gguaaua    ag  cga g
   U    G   C       Ca             a   -   u  g  g   ag     g  u       -uaa  au   g 


Annotation confidence Not enough data
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Genome context
MA_820781: 3384-3549 [-]

Database links

Mature pab-miR159e

Accession MIMAT0044689
Description Picea abies pab-miR159e mature miRNA
Sequence 146 - CUUGGAUUCAAGGGAGCUCCU - 166
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26318183
    Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
    "Xia R, Xu J, Arikit S, Meyers BC"
    "Mol Biol Evol (2015) 32:2905-2918