miRBase entry: pab-MIR162b

Stem-loop pab-MIR162b


Accession
MI0036597
Description
Picea abies pab-MIR162b precursor miRNA

Literature search
1 open access papers mention pab-MIR162b
(2 sentences)

Sequence

gggcgauuucagacgcuuggcagccuggaugcaaaggguuuaccgaccauggccacgggccgcuuugucucggUCGAUAAGCCUCUGCAUCCAGauuguuuggaaucuguugcuu
.(((((...((((..((.(((((.(((((((((..(((((((.(((((.(((((...))))).........))))).))))))).))))))))).))))).))..))))))))).

Structure
g     uuu    cg  u     c         aa       c     --------a     a 
 ggcga   caga  cu ggcag cuggaugca  ggguuua cgacc         uggcc  
 |||||   ||||  || ||||| |||||||||  ||||||| |||||         ||||| c
 ucguu   gucu  gg uuguu GACCUACGU  UCCGAAU GCUgg         gccgg  
u     ---    aa  u     a         -C       A     cucuguuuc     g 


Annotation confidence Not enough data
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Genome context
MA_47140: 10712-10826 [-]

Database links

Mature pab-miR162b

Accession MIMAT0044695
Description Picea abies pab-miR162b mature miRNA
Sequence 74 - UCGAUAAGCCUCUGCAUCCAG - 94
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26318183
    Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
    "Xia R, Xu J, Arikit S, Meyers BC"
    "Mol Biol Evol (2015) 32:2905-2918