miRBase entry: pab-MIR396m

Stem-loop pab-MIR396m


Accession
MI0036659
Description
Picea abies pab-MIR396m precursor miRNA

Literature search
1 open access papers mention pab-MIR396m
(5 sentences)

Sequence

gaauccugucauauuuUUCCACGGCUUUCUUGAACUUgaagaucaguaguggccgcggccgaucguaucgagaacagauccgaaucacaaguucaagaaagccgugggaaaauauagagggauuc
(((((((...((((((((((((((((((((((((((((............(((....)))(((((.(((.......))).)).))).))))))))))))))))))))))))))))...)))))))

Structure
       guc                            aagaucaguaguggccgcggcc   -  u   ga 
gaauccu   auauuuUUCCACGGCUUUCUUGAACUUg                      gau cg auc  g
|||||||   ||||||||||||||||||||||||||||                      ||| || |||  a
cuuaggg   uauaaaagggugccgaaagaacuugaac                      cua gc uag  a
       aga                            ---------------------a   a  c   ac 


Annotation confidence Not enough data
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Genome context
MA_20512: 24807-24931 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from pab-MIR396m
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pab-miR396m

Accession MIMAT0044757
Description Picea abies pab-miR396m mature miRNA
Sequence 17 - UUCCACGGCUUUCUUGAACUU - 37
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26318183
    Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
    "Xia R, Xu J, Arikit S, Meyers BC"
    "Mol Biol Evol (2015) 32:2905-2918