miRBase entry: pab-MIR396q

Stem-loop pab-MIR396q


Accession
MI0036663
Description
Picea abies pab-MIR396q precursor miRNA

Literature search
1 open access papers mention pab-MIR396q
(5 sentences)

Sequence

gaauccugucauauuuUUCCACGGCUUUCUUGAACUUcacgaucggcggcggcugauugcuucgauaacagaucuggauaacaagcucaagaaagccgagggaaaauauaaagggauuc
(((((((...((((((((((.((((((((((((.(((..((((((((....)))))))).((((((.....))).)))....))).)))))))))))).))))))))))...)))))))

Structure
       guc          A            A   ---------------------ca        g 
gaauccu   auauuuUUCC CGGCUUUCUUGA CUU                       cgaucggc g
|||||||   |||||||||| |||||||||||| |||                       ||||||||  
cuuaggg   uauaaaaggg gccgaaagaacu gaa                       guuagucg c
       aaa          a            c   caauaggucuagacaauagcuuc        g 


Annotation confidence Not enough data
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Genome context
MA_68251: 10977-11095 [-]

Database links

Mature pab-miR396q

Accession MIMAT0044761
Description Picea abies pab-miR396q mature miRNA
Sequence 17 - UUCCACGGCUUUCUUGAACUU - 37
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26318183
    Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
    "Xia R, Xu J, Arikit S, Meyers BC"
    "Mol Biol Evol (2015) 32:2905-2918