miRBase entry: pab-MIR397a

Stem-loop pab-MIR397a


Accession
MI0036668
Description
Picea abies pab-MIR397a precursor miRNA

Literature search
1 open access papers mention pab-MIR397a
(2 sentences)

Sequence

ggcucaggcaaccacauUAUUGAGUGCAGCGUUGACGAugauaaauuuuuucuacaaaauauccaucuuuguagaaugauaaguauaucguuaacuuugcacucuauaaucuguuugccaauggcu
((((..(((((.((.(((((.((((((((.((((((((((......((.(((((((((.........))))))))).))......)))))))))).)))))))).))))).)).)))))...))))

Structure
    -ca     c  c     U        C          auaaau  u         aua 
ggcu   ggcaa ca auUAU GAGUGCAG GUUGACGAug      uu uucuacaaa   u
||||   ||||| || ||||| |||||||| ||||||||||      || |||||||||   c
ucgg   ccguu gu uaaua cucacguu caauugcuau      ag aagauguuu   c
    uaa     u  c     u        u          augaau  u         cua 


Annotation confidence Not enough data
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Genome context
MA_10426128: 864-989 [+]

Database links

Mature pab-miR397a

Accession MIMAT0044766
Description Picea abies pab-miR397a mature miRNA
Sequence 18 - UAUUGAGUGCAGCGUUGACGA - 38
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26318183
    Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
    "Xia R, Xu J, Arikit S, Meyers BC"
    "Mol Biol Evol (2015) 32:2905-2918