miRBase entry: pab-MIR397d

Stem-loop pab-MIR397d


Accession
MI0036670
Description
Picea abies pab-MIR397d precursor miRNA

Literature search
1 open access papers mention pab-MIR397d
(2 sentences)

Sequence

ggcccaggcaaccacauUAUUGAGUGCAGCGUUGACGAugauaaaaauuuucuacaaaauauccaucuuuguagaaugauaaguauaucguuaacucugcacucuauaaucuguuugccaauggcu
((((..(((((.((.(((((.((((((((.((((((((((.........(((((((((.........))))))))).........)))))))))).)))))))).))))).)).)))))...))))

Structure
    -ca     c  c     U        C          auaaaaauu         aua 
ggcc   ggcaa ca auUAU GAGUGCAG GUUGACGAug         uucuacaaa   u
||||   ||||| || ||||| |||||||| ||||||||||         |||||||||   c
ucgg   ccguu gu uaaua cucacguc caauugcuau         aagauguuu   c
    uaa     u  c     u        u          augaauagu         cua 


Annotation confidence Not enough data
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Genome context
MA_23413: 16611-16736 [+]

Database links

Mature pab-miR397d

Accession MIMAT0044768
Description Picea abies pab-miR397d mature miRNA
Sequence 18 - UAUUGAGUGCAGCGUUGACGA - 38
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26318183
    Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
    "Xia R, Xu J, Arikit S, Meyers BC"
    "Mol Biol Evol (2015) 32:2905-2918