miRBase entry: pab-MIR398a

Stem-loop pab-MIR398a


Accession
MI0036688
Description
Picea abies pab-MIR398a precursor miRNA


Sequence

gaagaagacggccugaaaauccaacagggguaauacugggaacacaugcccugagacaucuccacguuaucuccauaaucuuuuuaaauuuugaaacccucugcuuccauaucuuucacuuugcacuugucaauggcggaugcugugggugCGUGUUCUCAGGUCACCCCUGuaggaaaaucugcuguucguuc
......((((((..((...(((.((((((((....((((((((((.(((((..((.((((((((..........................((((.......(((..................)))....))))))).)))))))..))))).))))))))))...)))))))).)))...)).)))))).....

Structure
gaagaa      cu  aaa   a        aaua          a     ug  a     -   cguuaucuccauaaucuuuuuaaauu    aacccuc   uuccauau 
      gacggc  ga   ucc acaggggu    cugggaacac ugccc  ag caucu cca                          uuga       ugc        c
      ||||||  ||   ||| ||||||||    |||||||||| |||||  || ||||| |||                          ||||       |||         
      uugucg  cu   agg uGUCCCCA    GACUCUUGUG guggg  uc guagg ggu                          aacu       acg        u
-cuugc      -u  aaa   a        -CUG          C     ug  -     c   --------------------------    ---guuc   uuucacuu 


Annotation confidence Not enough data
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Genome context
MA_136386: 9456-9649 [-]

Database links

Mature pab-miR398a

Accession MIMAT0044786
Description Picea abies pab-miR398a mature miRNA
Sequence 152 - CGUGUUCUCAGGUCACCCCUG - 172
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26318183
    Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
    "Xia R, Xu J, Arikit S, Meyers BC"
    "Mol Biol Evol (2015) 32:2905-2918