Stem-loop pab-MIR399g

Accession

MI0036696

Description

Picea abies pab-MIR399g precursor miRNA

Literature search

1 open access papers mention pab-MIR399g
(1 sentences)

Sequence

gauuuguacagggaaguuacaGGCAGCUCUCCUUUGGCAGGagggaggaugauacuaugauucaugauugaagccugcgcauuaguagugcuugcagucgaaguuauacaauacauauguauauuuguucauaauagagaucguagagcauuuuaaauuuaugcuguuacauauaguagugaauugguccgauguccagcuuuguccaguaauuagacugccauuccugccugccaaaggagaauugcccugcgacugcacuguacaaugc
...((((((((...((((.(((((((.(((((((((((((((((((((((((.........))))(((((((((((((......)))).)))).)))))(((..((((((.......))))))....)))......((.((((..((.((......(((((((((((.....)))))).))))))).)))))).))..........((((......)))))).))))).)))))))))))))).))).)))).))))...))))))))...

Structure

gau        gga    a    -   C              -     -  augauacuaugauucaugauugaagccugcgcauuaguagugcuugcagucgaaguuauacaauacauauguauauuuguucauaaua  g    ua  g  uuuuaa     -      u 
   uuguacag   aguu caGG CAG UCUCCUUUGGCAGG aggga gg                                                                                        ga aucg  ga ca      auuua ugcugu a
   ||||||||   |||| |||| ||| |||||||||||||| ||||| ||                                                                                        || ||||  || ||      ||||| |||||| c
   aacauguc   ucag gucc guu agaggaaaccgucc uccuu cc                                                                                        cu uagc  cu gu      uaagu augaua a
cgu        acg    c    c   a              g     a  ----------------------------------------------------------------gucagauuaaugaccuguuucgac  g    --  g  ------     g      u 

Annotation confidence Not enough data

Genome context

MA_242136: 6053-6323 [+]

Mature pab-miR399g

• Accession: MIMAT0044794
• Description: Picea abies pab-miR399g mature miRNA
• Sequence: 22 - GGCAGCUCUCCUUUGGCAGG - 41
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918