miRBase entry: pab-MIR399h

Stem-loop pab-MIR399h


Accession
MI0036697
Description
Picea abies pab-MIR399h precursor miRNA

Literature search
1 open access papers mention pab-MIR399h
(1 sentences)

Sequence

gauuuguacagggaaguUACAGGCAGCUCUCCUUUGGCaggagggaggaugauacuaugauucaugauugaagccugcgcauuaguuauacaauacauauguauauuuguucacaauagagaucguagagcauuuuaaauuuauguuguuacauauaguagugaauugguccgauguccagcuuuguccaguaauuagacugccguuccugcaugccaaaggagaauuguccugcgacugcacuguacaaugc
...((((((((...((((.(((((((.(((((((((((((.(((((((...(((((((((((.((((((((.((....)).))))))))..))).)))).))))........((((..((.((((..((.((.((((....(((((....)))))......)))).)).)))))).)).....)))).((((......)))))).))))).).)))))))))))).))).)))).))))...))))))))...

Structure
gau        gga    A    -   C            - g     -  augauacuaugauucaugauugaagccugcgcauuaguuauacaauacauauguauauuuguuc    ---ua  g    ua  g  u    --aauu     u 
   uuguacag   aguU CAGG CAG UCUCCUUUGGCa g aggga gg                                                                acaa     ga aucg  ga ca uuua      uaugu g
   ||||||||   |||| |||| ||| |||||||||||| | ||||| ||                                                                ||||     || ||||  || || ||||      |||||  
   aacauguc   ucag gucc guu agaggaaaccgu c uccuu cc                                                                uguu     cu uagc  cu gu aagu      auaca u
cgu        acg    c    u   a            a g     g  -------------------------------------------------gucagauuaaugacc    ucgac  g    --  g  u    gaugau     u 


Annotation confidence Not enough data
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Genome context
MA_214874: 2889-3141 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from pab-MIR399h
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pab-miR399h

Accession MIMAT0044795
Description Picea abies pab-miR399h mature miRNA
Sequence 18 - UACAGGCAGCUCUCCUUUGGC - 38
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26318183
    Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
    "Xia R, Xu J, Arikit S, Meyers BC"
    "Mol Biol Evol (2015) 32:2905-2918