Stem-loop pab-MIR1083

Accession

MI0036699

Description

Picea abies pab-MIR1083 precursor miRNA

Sequence

agcuucugccgccuggaaauucaUAGCCUGGAACGAAGCACGCUaucuuugaauuccacacucaaagaaaaacauuuuucgguuucgaucugcugguggaucuuaaucuguuuugcacuucuaucguuugcggcggaaaagauagcguguuucgauucaggcucaugaaucucuagcugucaauaagauucu
..(((.((.((.(((((.((((((((((((((.(((((((((((((((((....(((((.(....(((.((((........))))...)))...))))))......(((((..((((...........)))))))))))))))))))))))))).)))))))).)))))).))))).)).))..))).....

Structure

---ag   -c  c  c     a      -        A                 ---------------------------------gaau     a ucaa   --a    auu 
     cuu  ug cg cugga auucaU AGCCUGGA CGAAGCACGCUaucuuu                                     uccac c    aga   aaac   u
     |||  || || ||||| |||||| |||||||| |||||||||||||||||                                     ||||| |    |||   ||||    
     gaa  ac gu gaucu uaagua ucggacuu gcuuugugcgauagaaa                                     aggug g    ucu   uuug   u
ucuua   ua  u  c     c      c        a                 aggcggcguuugcuaucuucacguuuugucuaauucu     - -ucg   agc    gcu 

Annotation confidence Not enough data

Genome context

MA_294109: 2762-2953 [+]

Mature pab-miR1083

• Accession: MIMAT0044797
• Description: Picea abies pab-miR1083 mature miRNA
• Sequence: 24 - UAGCCUGGAACGAAGCACGCU - 44
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918