miRBase entry: pab-MIR1313c

Stem-loop pab-MIR1313c


Accession
MI0036706
Description
Picea abies pab-MIR1313c precursor miRNA

Literature search
1 open access papers mention pab-MIR1313c
(1 sentences)

Sequence

ucuuccugaugguauucUACCACUGAAAUUAUUGUUCGAaaugacaccugcagcucaucgagguauaccgccgugguaugguauccuucaaugcaucaccaaucuaaccuaguagcagggcugcaacacaugguaugauuuuggauccauugaggaauaauaaccaaguugcauggguggguuuauccaacaauaauuucaguggaagacuaccgucgaucuggaaga
((((((((((((((.(((.(((((((((((((((((.((.....(((((((((((.((((.(((.....))).)))).((((((.((((((((.(((...((((..(((..((.(((....))).))....)))..))))...))).)))))))).))....))))))))))..)))))......)).))))))))))))))))).))).))))))))....))))))

Structure
      ----        u   A                 C  -aauga     --      caucgagguauaccgccguggua    ----  c        c   acc    ua   --ua  a   g 
ucuucc    ugauggua ucU CCACUGAAAUUAUUGUU GA      caccu  gcagcu                       uggu    au cuucaaug auc   aauc  acc    gu gca g
||||||    |||||||| ||| ||||||||||||||||| ||      |||||  ||||||                       ||||    || |||||||| |||   ||||  |||    || |||  
agaagg    gcugccau aga ggugacuuuaauaacaa cu      guggg  cguuga                       acca    ua ggaguuac uag   uuag  ugg    ca cgu g
      ucua        c   a                 c  auuugg     ua      -----------------------    auaa  a        c   guu    ua   uaca  a   c 


Annotation confidence Not enough data
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Genome context
MA_91205: 17967-18194 [+]

Database links

Mature pab-miR1313c

Accession MIMAT0044804
Description Picea abies pab-miR1313c mature miRNA
Sequence 18 - UACCACUGAAAUUAUUGUUCGA - 39
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26318183
    Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
    "Xia R, Xu J, Arikit S, Meyers BC"
    "Mol Biol Evol (2015) 32:2905-2918