miRBase entry: pab-MIR3627a

Stem-loop pab-MIR3627a


Accession
MI0036713
Description
Picea abies pab-MIR3627a precursor miRNA


Sequence

gagggccugcuguguuucACGCGCAGGAGAGAUGACACUGuccuuguauaucgucuucauucauuucaguuuaagaggauaaagaguguauguauaagagcagugucaucucucugcgcacgaaacagagagauucuc
(((((.((.((.((((((..((((((.((((((((((((((.(((((((((((((((.((((.(((......))).)))).)))).)).))))))))).))))))))))))))))))))..)))))).)))).)))))

Structure
     c  g  g      AC      G              c         -  -    c    a   ca 
gaggg cu cu uguuuc  GCGCAG AGAGAUGACACUGu cuuguauau cg ucuu auuc uuu  g
||||| || || ||||||  |||||| |||||||||||||| ||||||||| || |||| |||| |||   
cucuu ga ga acaaag  cgcguc ucucuacugugacg gaauaugua gu agaa uagg gaa  u
     a  -  g      ca      -              a         u  g    a    a   uu 


Annotation confidence Not enough data
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Genome context
MA_18075: 28801-28938 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from pab-MIR3627a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pab-miR3627a

Accession MIMAT0044811
Description Picea abies pab-miR3627a mature miRNA
Sequence 19 - ACGCGCAGGAGAGAUGACACUG - 40
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26318183
    Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
    "Xia R, Xu J, Arikit S, Meyers BC"
    "Mol Biol Evol (2015) 32:2905-2918