miRBase entry: pab-MIR3701h

Stem-loop pab-MIR3701h


Accession
MI0036727
Description
Picea abies pab-MIR3701h precursor miRNA

Literature search
1 open access papers mention pab-MIR3701h
(4 sentences)

Sequence

CGAAGGGUCGGACUUGUUUAGCagaagaguuuucucuguugcaggauauggaugauuugccaaaauuuuucuaucaaaucgaaaggcuacaguagcuuuaaugcaauuuguuugguaauaucuucuauauucuuugccccuaaaaauucuucucuugaacaaugcccacccuucgucucuggacauauucccaugcc
((((((((.((..((((((((.(((((((((((.......((((((((((((.(((((((((((..........(((((((.(((((((...)))))))..))..))))))))))))).))).)))))))))..))).....))))))))))).))))))))..)).))))))))....(((........)))....

Structure
----------------------        C  AC        C           cucuguu   --         u   -        auuuuucuau     --  -a       c 
                      CGAAGGGU GG  UUGUUUAG agaagaguuuu       gca  ggauaugga gau uugccaaa          caaau  cg  aaggcua  
                      |||||||| ||  |||||||| |||||||||||       |||  ||||||||| ||| ||||||||          |||||  ||  ||||||| a
                      gcuuccca cc  aacaaguu ucuucuuaaaa       cgu  cuuauaucu cua aaugguuu          guuua  gu  uuucgau  
ccguacccuuauacaggucucu        c  gu        c           --auccc   uu         u   u        ----------     ac  aa       g 


Annotation confidence Not enough data
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Genome context
MA_8836430: 1717-1913 [-]

Database links

Mature pab-miR3701h

Accession MIMAT0044825
Description Picea abies pab-miR3701h mature miRNA
Sequence 1 - CGAAGGGUCGGACUUGUUUAGC - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26318183
    Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
    "Xia R, Xu J, Arikit S, Meyers BC"
    "Mol Biol Evol (2015) 32:2905-2918