miRBase entry: pab-MIR946a

Stem-loop pab-MIR946a


Accession
MI0036787
Description
Picea abies pab-MIR946a precursor miRNA

Literature search
1 open access papers mention pab-MIR946a
(4 sentences)

Sequence

aauugaugcguucacaguguacagaUGUGGAUAUAGGAGGGUUAGUuagcacauauauacaaaacccauuuaauagagauucugugagagcaucuuauuguagauuguuggcuauucgagaucaaacaaccguguucaaucaacuuauuguagauuguuggcuauucgagaucaaacaaccguguucaaucaaaugcauuuugauggccauacucaucaaauggguugccuguuugucuuuaccagcccuucugcuauccacaaccguaguaguuuguucacaucaauu
((((((((.(..((.(.(((((.(.((((((((((((((((((.((.((.(((.(((.....(((((((((.((.(((..(((.(((((((((((......)))).....))).)))))))...((((....))))(((((.((.....)).))))).(((((((.((((((((((((....))))........)).)))))))))))))..))))).)))))))))...))).)))))..)).)))))))))).)))))))).).))).)).).))..).))))))))

Structure
        c uu  c g  -   a a        -          A  -u  c   u   uacaa         a  a   -----------------------------------------------------------------------------------------au   g    -   -----    ua 
aauugaug g  ca a ug uac g UGUGGAUA UAGGAGGGUU GU  ag aca aua     aacccauuu au gag                                                                                           ucu ugag agc     aucu  u
|||||||| |  || | || ||| | |||||||| |||||||||| ||  || ||| |||     ||||||||| || |||                                                                                           ||| |||| |||     ||||   
uuaacuac c  gu u au aug c acaccuau gucuucccga ca  uc ugu ugu     uuggguaaa ua cuc                                                                                           aga gcuu ucg     uaga  u
        a uu  u g  g   c a        c          c  uu  -   u   --ccg         c  -   auaccgguaguuuuacguaaacuaacuugugccaacaaacuagagcuuaucgguuguuagauguuauucaacuaacuugugccaacaaacu   -    a   guugu    ug 


Annotation confidence Not enough data
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Genome context
MA_10431262: 8431-8719 [-]

Database links

Mature pab-miR946a

Accession MIMAT0044885
Description Picea abies pab-miR946a mature miRNA
Sequence 26 - UGUGGAUAUAGGAGGGUUAGU - 46
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26318183
    Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
    "Xia R, Xu J, Arikit S, Meyers BC"
    "Mol Biol Evol (2015) 32:2905-2918