miRBase entry: pab-MIR946g

Stem-loop pab-MIR946g


Accession
MI0036793
Description
Picea abies pab-MIR946g precursor miRNA

Literature search
1 open access papers mention pab-MIR946g
(4 sentences)

Sequence

uacauaUGUGGAUAUAGAAGGGUUAGUuaguaaauaguacaaaacccauuuaauagagauuccaugagaggcauuuuauuauagauuguugguuguucgagaccaaaggacugucuucaagaaacugcauuuugauggucauauuaauuaaauggguugcuuguuuucucuuuaucaguccuucuacuauccacauccaua
.....(((((((((((((((((....((.(((((.((.((((((((((((((((.((....((((.(((((((.(((.....((((.(((((((......)))))....)).)))).....))).))).)))).)))).....)).))))))))))))..))))...)).))))).)))))))))).))))))))).....

Structure
uacau         -        UUAG  a     u  --u    --            a  -gauu    g    -   u   auuau    u  ----     gu 
     aUGUGGAUA UAGAAGGG    Uu guaaa ag   acaa  aacccauuuaau ga     ccau agag gca uuu     agau gu    ugguu  u
     ||||||||| ||||||||    || ||||| ||   ||||  |||||||||||| ||     |||| |||| ||| |||     |||| ||    |||||   
     uacaccuau aucuuccu    ga uauuu uc   uguu  uuggguaaauua uu     ggua uuuu cgu aaa     ucug ca    accag  c
auacc         c        ----  c     c  uuu    cg            a  auacu    g    a   c   gaacu    u  ggaa     ag 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
MA_781091: 2438-2638 [-]

Database links

Mature pab-miR946g

Accession MIMAT0044891
Description Picea abies pab-miR946g mature miRNA
Sequence 7 - UGUGGAUAUAGAAGGGUUAGU - 27
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26318183
    Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
    "Xia R, Xu J, Arikit S, Meyers BC"
    "Mol Biol Evol (2015) 32:2905-2918