miRBase entry: pab-MIR946h

Stem-loop pab-MIR946h


Accession
MI0036794
Description
Picea abies pab-MIR946h precursor miRNA

Literature search
1 open access papers mention pab-MIR946h
(4 sentences)

Sequence

uacagaUGUGGAUAUAGGAGGGUUAGGuaauguaauguacacaacccauuuaauugaaauggcacgacagccuucuagauuguuacuagaacgcuccagaucugccuuguuuauuaauuaagcgaguuguugguaugcuuuuuccaacccuucuucuauccacauucgua
(((.((((((((((.(((((((((.((....((...(((((((((.(.((((((((((((((((.((((((.((((((.......)))))).)))...).))))))..)))..))))))))).).)))))..)))))).....)))))))))))..)))))))))).)))

Structure
   a          -U         A  -uaau  aau    --     c a         --   --    c  - ---   c      au 
uac gaUGUGGAUA  AGGAGGGUU GG     gu   guac  acaac c uuuaauuga  aau  ggca ga c   agc uucuag  u
||| ||||||||||  ||||||||| ||     ||   ||||  ||||| | |||||||||  |||  |||| || |   ||| ||||||  g
aug uuacaccuau  ucuucccaa cc     cg   uaug  uguug g gaauuaauu  uug  ccgu cu g   ucg aagauc  u
   c          cu         -  uuuuu  ---    gu     a c         au   uu    -  a acc   c      au 


Annotation confidence Not enough data
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Genome context
MA_875176: 5480-5649 [+]

Database links

Mature pab-miR946h

Accession MIMAT0044892
Description Picea abies pab-miR946h mature miRNA
Sequence 7 - UGUGGAUAUAGGAGGGUUAGG - 27
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26318183
    Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
    "Xia R, Xu J, Arikit S, Meyers BC"
    "Mol Biol Evol (2015) 32:2905-2918