miRBase entry: pab-MIR950e

Stem-loop pab-MIR950e


Accession
MI0036800
Description
Picea abies pab-MIR950e precursor miRNA

Literature search
1 open access papers mention pab-MIR950e
(5 sentences)

Sequence

guggagaagaaagcgaagguguucuUCACGUCUGGGCCGCGAUGGUUuguuuuacaaauaaaccaucugccccagacgagaagagcaccuucgccuucguuuac
(((((((((...(((((((((((((((.((((((((.((.((((((((((((...)))))))))))))).)))))))).))))))))))))))))))).)))))

Structure
     -    aaa               A        C  C            u 
gugga gaag   gcgaagguguucuUC CGUCUGGG CG GAUGGUUuguuu  
||||| ||||   ||||||||||||||| |||||||| || |||||||||||| a
cauuu cuuc   cgcuuccacgagaag gcagaccc gu cuaccaaauaaa  
     g    ---               a        c  -            c 


Annotation confidence Not enough data
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Genome context
MA_10432994: 24195-24298 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from pab-MIR950e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pab-miR950e

Accession MIMAT0044898
Description Picea abies pab-miR950e mature miRNA
Sequence 26 - UCACGUCUGGGCCGCGAUGGUU - 47
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26318183
    Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
    "Xia R, Xu J, Arikit S, Meyers BC"
    "Mol Biol Evol (2015) 32:2905-2918