Stem-loop pab-MIR11441a

Accession

MI0036866

Description

Picea abies pab-MIR11441a precursor miRNA

Sequence

ugggaagagagauugcagacgcuucAUUGCCGCGUCGUCUUUGGCGuccgacagaaaaaauugaugauuugcugcagcaaucauggguaaguacugaaucauucaaagcucuagaaaauaaaaaaauauuuuacaaaaaucuguguacaauuuuugaauucuucaucguucagguaauaaacgaagugcgcgggauuagaaugcuugaucacacggauagugauagugaugaugacagcucccca
((((....(((.(((((..(((((((((((((.((.(((...(((((.(..........(((.((((((.((....)))))))).))).(((..((((...))))..)))....((((((......))))))........((((((((......((((...))))(((((.........))))).)))))))).....).))))).))).)).))).)))))).))))....)).))))))))))

Structure

    aaga   a   -  --ga    -      -   C  C   UUU     c ----------------------------------------------------------------------------------------------------gacagaaaaa   g      u  u 
uggg    gag uug ca    cgcu ucAUUG CCG GU GUC   GGCGu c                                                                                                              auu augauu gc g
||||    ||| ||| ||    |||| |||||| ||| || |||   ||||| |                                                                                                              ||| |||||| ||  
accc    cuc gac gu    guga agugau ggc ca uag   ucgua g                                                                                                              ugg uacuaa cg c
    ----   -   a  agua    u      a   a  c   --u     a auuagggcgcgugaagcaaauaauggacuugcuacuucuuaaguuuuuaacaugugucuaaaaacauuuuauaaaaaaauaaaagaucucgaaacuuacuaagucaugaa   g      -  a 

Annotation confidence Not enough data

Genome context

MA_6920157: 259-503 [+]

Mature pab-miR11441a

• Accession: MIMAT0044964
• Description: Picea abies pab-miR11441a mature miRNA
• Sequence: 26 - AUUGCCGCGUCGUCUUUGGCG - 46
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918