Stem-loop pab-MIR11445c

Accession

MI0036873

Description

Picea abies pab-MIR11445c precursor miRNA

Sequence

gaugaggcacuucgauuggcuagggaugaauuguugggauaccuagaugugauucgaaauagucauccuguuaauuuaacgaacacccaagagaugguggacuugauuaaaaggauguuggaugaggccaauaauugacacauauuggAUUUUAAUUUCACACUUGGGCugagugauuuugagucauc
(((((..((..(((.(((((((((..((((..((((((((.((...(((((..((((......((((((.((((((....(..((((........))))..)..)))))).))))))((((......))))...)))))))))...))))))))))))))..))).)))))).)))...))..)))))

Structure

     gg  -cu   a      -   ga    uu        a  uag     au    -----------aauagu      g      uaac aa    caa 
gauga  ca   ucg uuggcu agg  ugaa  guugggau cc   augug  ucga                 cauccu uuaauu    g  cacc   g
|||||  ||   ||| |||||| |||  ||||  |||||||| ||   |||||  ||||                 |||||| ||||||    |  ||||    
cuacu  gu   agu aguCGG UUC  ACUU  UAAUUUUA gg   uacac  aguu                 guagga aauuag    c  gugg   a
     ga  uuu   g      G   AC    --        -  uua     --    aauaaccggaguagguu      a      --uu ag    uag 

Annotation confidence Not enough data

Genome context

MA_8565437: 12-199 [+]

Mature pab-miR11445c

• Accession: MIMAT0044971
• Description: Picea abies pab-miR11445c mature miRNA
• Sequence: 149 - AUUUUAAUUUCACACUUGGGC - 169
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918