miRBase entry: pab-MIR11472

Stem-loop pab-MIR11472


Accession
MI0036916
Description
Picea abies pab-MIR11472 precursor miRNA


Sequence

uuaugaacuuaauccacguugucaccaugaaucgagagaaaaacgacucuaguaaugugaaucuaggaauuaguuuugcgaaaacaguguuauaguuugagacuacugaugucgcaugcgaugaaacugugacguuacuagagccaCUUUUCUCUCGAUUCUUGGUGgaacauuggguugaacucguaa
.(((((..((((((((.(((.((((((.((((((((((((((..(.((((((((((((.(...(((......((..(((((...(((((((.........))).))))...))))).)).......)))).)))))))))))).)..)))))))))))))).)))))))))..))))))))..))))).

Structure
u     ac        -c   g      u              ac a            g auc   -gaauua  uu     aaa    -   aua 
 uauga  uuaaucca  guu ucacca gaaucgagagaaaa  g cucuaguaaugu a   uag       gu  ugcga   cagu guu   g
 |||||  ||||||||  ||| |||||| ||||||||||||||  | |||||||||||| |   |||       ||  |||||   |||| |||   u
 augcu  aguugggu  caa gGUGGU CUUAGCUCUCUUUU  c gagaucauugca u   guc       cg  acgcu   guca cag   u
a     ca        ua   -      U              Ca c            g ---   aaaguag  -u     gua    u   agu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
MA_126473: 9228-9416 [-]

Database links

Mature pab-miR11472

Accession MIMAT0045014
Description Picea abies pab-miR11472 mature miRNA
Sequence 147 - CUUUUCUCUCGAUUCUUGGUG - 167
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26318183
    Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
    "Xia R, Xu J, Arikit S, Meyers BC"
    "Mol Biol Evol (2015) 32:2905-2918