miRBase entry: pab-MIR11474

Stem-loop pab-MIR11474


Accession
MI0036918
Description
Picea abies pab-MIR11474 precursor miRNA


Sequence

cacuggcagauacauucaccauuuucgacagguuauccacucauuuuaaaaaucaaagugccauuaaggaacccGAGAAUCGCUGGAGAUACCUGccgaug
...((((((.((..(((((.(((((((...(((..(((...((((((.......)))))).......))))))))))))).).))))..)).))))))...

Structure
cac      a  ca    - c       aca   ua   ----acu      aa 
   uggcag ua  uuca c auuuucg   ggu  ucc       cauuuu  a
   |||||| ||  |||| | |||||||   |||  |||       ||||||  a
   gccGUC AU  AGGU G UAAGAGc   cca  agg       gugaaa  a
gua      C  AG    C C       ---   --   aauuacc      cu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
MA_5156669: 136-236 [+]

Database links

Mature pab-miR11474

Accession MIMAT0045016
Description Picea abies pab-miR11474 mature miRNA
Sequence 75 - GAGAAUCGCUGGAGAUACCUG - 95
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26318183
    Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
    "Xia R, Xu J, Arikit S, Meyers BC"
    "Mol Biol Evol (2015) 32:2905-2918