miRBase entry: pab-MIR11501

Stem-loop pab-MIR11501


Accession
MI0036961
Description
Picea abies pab-MIR11501 precursor miRNA


Sequence

agaauaagucagcgagagaugagUAUUGGAAAGGCGAGUUGGCUuugcaagacguaaagcgaaccaaaaaaugauucaguucuucuggacaaagugauaauauggauaauaacaagaauguucaaugggaacaguguugcuguuauccauuuuaucauucuuguaaguccaugagaucacugucaugagccaaagugaauccuuuuuuugguuagcuuugcgucuaacaaaucccacucgucauuccaauacuuaccucucccugaauuauucu
(((((((.((((.(((((.((((((((((((.(((((((.((.((((..(((((((((((.((((((((((.((((((.((.(((..((((..(((((..(((((((....(((((((((...((((((((((((...)))))).))))))....)))))))))..)))))))..)))))))))..)))...)).))))))..)))))))))).)))))))))))..)))).)).))))))).)))))))))))).))))).)))).)))))))

Structure
       g    c     a            A       U  C    ca           g          -u      g  --c   ug    aa     aa       aaua         -uuc      -      g 
agaauaa ucag gagag ugagUAUUGGAA GGCGAGU GG Uuug  agacguaaagc aaccaaaaaa  gauuca uu   uuc  gaca  gugau  uauggau    acaagaaug    aauggg aacagu  
||||||| |||| ||||| |||||||||||| ||||||| || ||||  ||||||||||| ||||||||||  |||||| ||   |||  ||||  |||||  |||||||    |||||||||    |||||| |||||| u
ucuuauu aguc cucuc auucauaaccuu cugcuca cc aaac  ucugcguuucg uugguuuuuu  cuaagu aa   gag  cugu  cacua  guaccug    uguucuuac    uuaccu uugucg  
       a    c     c            a       c  u    aa           a          uc      g  acc   ua    --     ga       --aa         uauu      a      u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
MA_836587: 1194-1467 [-]

Database links

Mature pab-miR11501

Accession MIMAT0045059
Description Picea abies pab-miR11501 mature miRNA
Sequence 24 - UAUUGGAAAGGCGAGUUGGCU - 44
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26318183
    Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
    "Xia R, Xu J, Arikit S, Meyers BC"
    "Mol Biol Evol (2015) 32:2905-2918