Stem-loop pab-MIR11498c

Accession

MI0036972

Description

Picea abies pab-MIR11498c precursor miRNA

Sequence

caugucauauuacaucacgaaugcaauugcuggaaauagaacaaauuuggcagcaaguagaguguuaugacauuauuuugaagcuucaguacuuucuggaguuuacaaaccuggucgucaaauaucaauccauccaccacucugauaagaacauagaccacccaucgccacuuuuggggaaaaccaucuuugucuaaccagauuguaUCAGUGAUGUAGUAUGACAUG
((((((((((((((((((..(((((((..((((...((((.((((..(((..........(((((....)))))..(((((((((((((......))))))))).))))..(((((......(((((...............)))))........)))))((((..........)))).....)))..)))))))).)))))))))))..))))))))))))))))))

Structure

                  ga       ug    aaa    a    uu   ------------------------------------------------cagcaaguagaguguuaugacauuau    -         ua 
caugucauauuacaucac  augcaau  cugg   uaga caaa  ugg                                                                          uuug aagcuucag  c
||||||||||||||||||  |||||||  ||||   |||| ||||  |||                                                                          |||| |||||||||   
GUACAGUAUGAUGUAGUG  Uauguua  gacc   aucu guuu  acc                                                                          aaac uuugagguc  u
                  AC       --    --a    -    cu   aaaagggguuuucaccgcuacccaccagauacaagaauagucucaccaccuaccuaacuauaaacugcuggucc    a         uu 

Annotation confidence Not enough data

Genome context

MA_121212: 11698-11925 [+]

Mature pab-miR11498c

• Accession: MIMAT0045070
• Description: Picea abies pab-miR11498c mature miRNA
• Sequence: 208 - UCAGUGAUGUAGUAUGACAUG - 228
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918