miRBase entry: pab-MIR11513

Stem-loop pab-MIR11513


Accession
MI0036978
Description
Picea abies pab-MIR11513 precursor miRNA


Sequence

uuaauaagcaccuggcuacagagcaUUAAAUGCUUUGCAUGUCGGGGugugcauuguuguaucauuugauccaauagugcacaccuccgcauguagagcauuaaaugcucuguaucugggugcuuauuga
(((((((((((((((.(((((((((((.(((((((((((((.(((((((((((((((((.(((....))).)))))))))))))).)))))))))))))))).))))))))))).)))))))))))))))

Structure
               c           A             U   -              u   a 
uuaauaagcaccugg uacagagcaUU AAUGCUUUGCAUG CGG GGugugcauuguug auc u
||||||||||||||| ||||||||||| ||||||||||||| ||| |||||||||||||| |||  
aguuauucguggguc augucucguaa uuacgagauguac gcc ccacacgugauaac uag u
               u           a             -   u              c   u 


Annotation confidence Not enough data
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Genome context
MA_2703: 14438-14567 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from pab-MIR11513
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pab-miR11513

Accession MIMAT0045076
Description Picea abies pab-miR11513 mature miRNA
Sequence 26 - UUAAAUGCUUUGCAUGUCGGGG - 47
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26318183
    Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
    "Xia R, Xu J, Arikit S, Meyers BC"
    "Mol Biol Evol (2015) 32:2905-2918