miRBase entry: pab-MIR11481b

Stem-loop pab-MIR11481b


Accession
MI0036979
Description
Picea abies pab-MIR11481b precursor miRNA


Sequence

accgugcaaucaucugaUCCGGUGAAGAGUAGCCCGUCagcggugagcucggaucgucuagaugcacuuggacucccacaguucgcacaccuucacgcuagucggaggaacugugggaacugucgagacgaugggagcucacagcgaggccgucgauaccgucgucguagggcacgacgggcuacucuucacuggaucgaaugacaacacggu
((((((...((((.((((((((((((((((((((((((.((.((((((((..(((((((.(((......((..((((((((((......(((((((....)).))))))))))))))).))))).)))))))..)))))))).))...(((.(((((......)))).).)))..)))))))))))))))))))))))).))))...))))))

Structure
      caa    c                        -----------------------------a  g        gg       a   gcacuu  ac          cgcaca     -  g 
accgug   ucau ugaUCCGGUGAAGAGUAGCCCGUC                              gc gugagcuc  aucgucu gau      gg  ucccacaguu      ccuuc ac c
||||||   |||| ||||||||||||||||||||||||                              || ||||||||  ||||||| |||      ||  ||||||||||      ||||| ||  
uggcac   agua gcuaggucacuucucaucgggcag                              cg cacucgag  uagcaga cug      uc  agggugucaa      ggagg ug u
      aac    a                        cacgggaugcugcugccauagcugccggag  a        gg       g   ------  -a          ------     c  a 


Annotation confidence Not enough data
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Genome context
MA_10427929: 1261-1473 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from pab-MIR11481b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pab-miR11481b

Accession MIMAT0045077
Description Picea abies pab-miR11481b mature miRNA
Sequence 18 - UCCGGUGAAGAGUAGCCCGUC - 38
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26318183
    Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
    "Xia R, Xu J, Arikit S, Meyers BC"
    "Mol Biol Evol (2015) 32:2905-2918