Stem-loop pab-MIR11481c

Accession

MI0036980

Description

Picea abies pab-MIR11481c precursor miRNA

Sequence

accgugcaaucaucugaUCCGGUGAAGAGUAGCCCGUCagcggugagcucggaucgucuagaugcacuuggacucccacaguucgcacaccuucacgcuagucggaggaacugugggaacugucgagacgaugggagcucacagcgaggccgucgauaccgucgucguagggcacgacgggcuacucuucacuggaucgaaugacaacacggu
((((((...((((.((((((((((((((((((((((((.((.((((((((..(((((((.(((......((..((((((((((......(((((((....)).))))))))))))))).))))).)))))))..)))))))).))...(((.(((((......)))).).)))..)))))))))))))))))))))))).))))...))))))

Structure

      caa    c                        -----------------------------a  g        gg       a   gcacuu  ac          cgcaca     -  g 
accgug   ucau ugaUCCGGUGAAGAGUAGCCCGUC                              gc gugagcuc  aucgucu gau      gg  ucccacaguu      ccuuc ac c
||||||   |||| ||||||||||||||||||||||||                              || ||||||||  ||||||| |||      ||  ||||||||||      ||||| ||  
uggcac   agua gcuaggucacuucucaucgggcag                              cg cacucgag  uagcaga cug      uc  agggugucaa      ggagg ug u
      aac    a                        cacgggaugcugcugccauagcugccggag  a        gg       g   ------  -a          ------     c  a 

Annotation confidence Not enough data

Genome context

MA_10427929: 3581-3793 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pab-MIR11481c

Mature pab-miR11481c

• Accession: MIMAT0045078
• Description: Picea abies pab-miR11481c mature miRNA
• Sequence: 18 - UCCGGUGAAGAGUAGCCCGUC - 38
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918