miRBase entry: pab-MIR11518

Stem-loop pab-MIR11518


Accession
MI0036988
Description
Picea abies pab-MIR11518 precursor miRNA


Sequence

caauuugguucggcuguuggggucucgauucgaaagcccuacgagcgcacugguauauaaguacaugguccauggauaccuccauaaauuuuaauggauaucuuaagaacugucccaccucuuucucagcaaauagaaauuuaugaagguaaccauugaccagguacucauauaccagugcgcuugUCGGGCUUUCGAAUCAAUACCccaacaaagugggaacaauug
....(((.(((.(((((((((((...(((((((((((((.((((((((((((((((((.(((((.(((((.((((.(((((.((((((((((.((.........((((..((...))..)))).........)).)))))))))).))))).)))).))))).))))).)))))))))))))))))).)))))))))))))...))))))))..))).))).)))...

Structure
caau   g   g   --        cuc             u                  a     a     c    a     c          a  ggauaucuu    ac  u 
    uug uuc gcu  guuggggu   gauucgaaagccc acgagcgcacugguauau aguac ugguc augg uaccu cauaaauuuu au         aaga  ug  
    ||| ||| |||  ||||||||   ||||||||||||| |||||||||||||||||| ||||| ||||| |||| ||||| |||||||||| ||         ||||  || c
    aac agg uga  caaccCCA   CUAAGCUUUCGGG Uguucgcgugaccauaua ucaug accag uacc augga guauuuaaag ua         uucu  ac  
-guu   a   g   aa        UAA             C                  c     g     u    a     a          a  aacgacucu    cc  c 


Annotation confidence Not enough data
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Genome context
MA_68177: 1788-2015 [-]

Database links

Mature pab-miR11518

Accession MIMAT0045086
Description Picea abies pab-miR11518 mature miRNA
Sequence 187 - UCGGGCUUUCGAAUCAAUACC - 207
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26318183
    Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
    "Xia R, Xu J, Arikit S, Meyers BC"
    "Mol Biol Evol (2015) 32:2905-2918