miRBase entry: pab-MIR11523d

Stem-loop pab-MIR11523d


Accession
MI0036998
Description
Picea abies pab-MIR11523d precursor miRNA


Sequence

ugagcuucaucuUCUGAGCAGAUUUAAUGCCCGAccccuacacagaaggauuuguuggaacaacaccaugcuuguaggguuggggguuuaaauugcucaagaaguugaaguugg
..(((((((.(((((((((((.((.(((.((((((((.((((.....((...(((((...))))))).....)))))))))))).))).)).)))))).))))).)))))))..

Structure
ug       u     -      A  U   G        c    cagaa  auu     g 
  agcuuca cuUCU GAGCAG UU AAU CCCGAccc uaca     gg   uguug  
  ||||||| ||||| |||||| || ||| |||||||| ||||     ||   ||||| a
  uugaagu gaaga cucguu aa uug ggguuggg augu     cc   acaac  
gg       u     a      a  u   g        -    ucgua  ---     a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
MA_2634: 21932-22045 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from pab-MIR11523d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pab-miR11523d

Accession MIMAT0045096
Description Picea abies pab-miR11523d mature miRNA
Sequence 13 - UCUGAGCAGAUUUAAUGCCCGA - 34
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26318183
    Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
    "Xia R, Xu J, Arikit S, Meyers BC"
    "Mol Biol Evol (2015) 32:2905-2918