Stem-loop pab-MIR11541

Accession

MI0037027

Description

Picea abies pab-MIR11541 precursor miRNA

Sequence

guagagucuuuaagacugcagcugcugauauauauauccguaauauugucuugguaauauauauaucguccgcuguauauugaucgccacgacugauauauauacaguuaaauugucuugauauauauucgacaguguauauaccaccUGCCGCAGUCUUAAAGACCCUGc
((((.((((((((((((((.((...(((((((((((((((...........)))..))))))))))))...(((((((((..((((.......))))..)))))))))..........((.(((((((.(....).))))))).))...)).)))))))))))))).))))

Structure

    a              a  ------------------------------------------------------------------------------ugc            --   uaau 
guag gucuuuaagacugc gc                                                                                 ugauauauauau  ccg    a
|||| |||||||||||||| ||                                                                                 ||||||||||||  |||    u
cGUC CAGAAAUUCUGACG CG                                                                                 gcuauauauaua  ggu    u
    C              C  Uccaccauauaugugacagcuuauauauaguucuguuaaauugacauauauauagucagcaccgcuaguuauaugucgccu            au   ucug 

Annotation confidence Not enough data

Genome context

MA_10436584: 16596-16766 [-]

Mature pab-miR11541

• Accession: MIMAT0045125
• Description: Picea abies pab-miR11541 mature miRNA
• Sequence: 149 - UGCCGCAGUCUUAAAGACCCUG - 170
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918