miRBase entry: pab-MIR11557

Stem-loop pab-MIR11557


Accession
MI0037052
Description
Picea abies pab-MIR11557 precursor miRNA


Sequence

uuauuuguaucaugucugaucucaaauccuggaucaguacaguacccggagauauuuaaacauguagagaugcacaauuuuacuuauacuagcucugaucUUAGAUUCCGGAUCAACGUAGCgguga
....((((...((((.((((((..((((..(((((((..(((((....(((((.......(((......)))....))))).....)))).)..)))))))..))))..)))))))))).))))...

Structure
uuau    auc    c      ca    cu       ua -    -cccg     auuuaaa   gu 
    uugu   augu ugaucu  aauc  ggaucag  c agua     gagau       cau  a
    ||||   |||| ||||||  ||||  |||||||  | ||||     |||||       |||   
    ggCG   UGCA ACUAGG  UUAG  Ucuaguc  g ucau     uuuua       gua  g
-agu    --A    -      CC    AU       uc a    auuca     ---acac   ga 


Annotation confidence Not enough data
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Genome context
MA_394405: 1798-1924 [-]

Database links

Mature pab-miR11557

Accession MIMAT0045150
Description Picea abies pab-miR11557 mature miRNA
Sequence 101 - UUAGAUUCCGGAUCAACGUAGC - 122
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26318183
    Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
    "Xia R, Xu J, Arikit S, Meyers BC"
    "Mol Biol Evol (2015) 32:2905-2918