miRBase entry: pab-MIR11559

Stem-loop pab-MIR11559


Accession
MI0037054
Description
Picea abies pab-MIR11559 precursor miRNA


Sequence

auggcggccguagaagaugaugcagauaagaaauacaugauucugugcacgcugauugcccuugccacugccguuuauucgauaguuuaugaguucuuaccccaugggaaguaccagcuucaagcagucuacguugcggugcUUAUUAUUCUCUUGAUGGCCCcuau
..((.(((((((((.(((((((((((...............)))))(((((..((((((....((.((((.((......)).))))...((.((.(((.(((...)))))).)))))).....))))))..)).))).......)))))).)))..))))))))...

Structure
-au  c      --   a      gcagauaagaaauacaugauucugu   -  cu      -ccuu  cacugccguuuauucgauaguuua  a  u   a   c 
   gg ggccgu  aga gaugau                         gca cg  gauugc     gc                        ug gu cuu ccc  
   || ||||||  ||| ||||||                         ||| ||  ||||||     ||                        || || ||| ||| a
   cC CCGGUA  UCU UUAUUA                         cgu gc  cugacg     cg                        ac ca gaa ggg  
uau  -      GU   C      ------------------UUcgugg   u  au      aacuu  ------------------------  -  u   -   u 


Annotation confidence Not enough data
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Genome context
MA_256013: 2742-2908 [-]

Database links

Mature pab-miR11559

Accession MIMAT0045152
Description Picea abies pab-miR11559 mature miRNA
Sequence 143 - UUAUUAUUCUCUUGAUGGCCC - 163
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26318183
    Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
    "Xia R, Xu J, Arikit S, Meyers BC"
    "Mol Biol Evol (2015) 32:2905-2918