miRBase entry: pab-MIR11409f

Stem-loop pab-MIR11409f


Accession
MI0037070
Description
Picea abies pab-MIR11409f precursor miRNA


Sequence

aaucagcauauauccauuuuaacucuggaucuaucaaaagucgagaggcaucaaaucccuugagaugcaaaccuuaccgcaaguuuugcacacuaaaaaagauuugcaccucaggagauuuaaucccucuuggugaUUGAUAGAUCCAUAGGUAAGUuggaucuauucugguu
((((((.(((.(((((.((((.((.((((((((((((..(((((((((.((.(((((.((((((.((((((.(((...((((...)))).........))).)))))).)))))).))))).)).)))))))))..)))))))))))).)).)))).))))).))).))))))

Structure
      c   u     u    a  c            aa         c  c     c      a      c   ------acc    g 
aaucag aua aucca uuua cu uggaucuaucaa  gucgagagg au aaauc cuugag ugcaaa cuu         gcaa  
|||||| ||| ||||| |||| || ||||||||||||  ||||||||| || ||||| |||||| |||||| |||         |||| u
uugguc uau uaggu GAAU GA ACCUAGAUAGUU  ugguucucc ua uuuag ggacuc acguuu gaa         cguu  
      u   c     U    G  U            ag         c  a     a      c      a   aaaaucaca    u 


Annotation confidence Not enough data
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Genome context
MA_10252024: 7479-7651 [+]

Database links

Mature pab-miR11409f

Accession MIMAT0045168
Description Picea abies pab-miR11409f mature miRNA
Sequence 137 - UUGAUAGAUCCAUAGGUAAGU - 157
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26318183
    Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
    "Xia R, Xu J, Arikit S, Meyers BC"
    "Mol Biol Evol (2015) 32:2905-2918