Stem-loop pab-MIR11515b

Accession

MI0037088

Description

Picea abies pab-MIR11515b precursor miRNA

Sequence

cggaugaaaccucgaacagcuacagcuacgaugucucuugcaggaaaaaaaugugcauauuuuuauugauuucgcagaauacacaaaaacaauggauuacauaaaacuagcacagaagacaUUGUAGCUGCACUUGUUCAAGguuucaacg
((..((((((((.((((((...(((((((((((((((((((((.........((.(((..((((..((((((....)))).))..))))..))).)).........)).))).)).))))))))))))))...)))))).)))))))).))

Structure

  ga        c      cua              -  -   -  gaaaaaaau  g   au    au  -    c 
cg  ugaaaccu gaacag   cagcuacgaugucu cu ugc ag         gu cau  uuuu  ug auuu g
||  |||||||| ||||||   |||||||||||||| || ||| ||         || |||  ||||  || ||||  
gc  acuuugGA CUUGUU   GUCGAUGUUacaga ga acg uc         ua gua  aaaa  ac uaag c
  -a        A      CAC              a  c   a  aaaauacau  g   ac    ac  a    a 

Annotation confidence Not enough data

Genome context

MA_474658: 4494-4644 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pab-MIR11515b

Mature pab-miR11515b

• Accession: MIMAT0045186
• Description: Picea abies pab-miR11515b mature miRNA
• Sequence: 122 - UUGUAGCUGCACUUGUUCAAG - 142
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918