miRBase entry: pab-MIR11575

Stem-loop pab-MIR11575


Accession
MI0037089
Description
Picea abies pab-MIR11575 precursor miRNA


Sequence

ggagugaguuaaaaaguggacaaacucaaccuuucuggugacuauuuuuuuuagcgaggcaaaguuccaugcucauccacucauuuuuuuggaauuccgaccaucugggucuuuauaaaauggacuaaaaccccuaguggcaaaguuccauggucaaaauucccgucaaucagguggaaaaaugguugaguUUGUCAACUUUUUAACUUACUcu
(((((((((((((((((.(((((((((((((..((....))...........((((.((.......)).))))..((((((.........((((((..(((((..((((.((((.((....((........))....))..)))).)))))))))..)))))).........)))))).....))))))))))))).)))))))))))))))))

Structure
                 g             uuucuggugacuauuuuuuuuagcgaggcaaaguuccaugcuca      cauuuuuuu      cc     uc    u    -a  aaau  acu 
ggagugaguuaaaaagu gacaaacucaacc                                            uccacu         ggaauu  gacca  uggg cuuu  ua    gg   a
||||||||||||||||| |||||||||||||                                            ||||||         ||||||  |||||  |||| ||||  ||    ||    
ucUCAUUCAAUUUUUCA CUGUUugaguugg                                            aggugg         ccuuaa  cuggu  accu gaaa  gu    cc   a
                 A             ---------------------------------------uaaaa      acuaacugc      aa     --    u    cg  gauc  caa 


Annotation confidence Not enough data
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Genome context
MA_253528: 3092-3305 [+]

Database links

Mature pab-miR11575

Accession MIMAT0045187
Description Picea abies pab-miR11575 mature miRNA
Sequence 192 - UUGUCAACUUUUUAACUUACU - 212
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26318183
    Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
    "Xia R, Xu J, Arikit S, Meyers BC"
    "Mol Biol Evol (2015) 32:2905-2918