miRBase entry: pab-MIR11577

Stem-loop pab-MIR11577


Accession
MI0037091
Description
Picea abies pab-MIR11577 precursor miRNA


Sequence

aguaggagcgcuucccugucaauauuauggccgggaucauaaacaacugucauauaucucuuaacguacacuaugucgaguucuguucaauuuuuucauuuucucagucccuuaucgauggauaauuugcauagugggaaaauuaauugaaaagaacugcacacaguguaagcgaaagguuugcgcugagugagugagagacagauaugaggUUGUUUGAGAUCCCUGGGCAUGauauauacagggaugagcucguacu
((((.((((.(.(((((((..((((((((.((((((((.(((((((((.((((((.(((((((.(.(((....(((..((((((.(((((((.....(((((((((((...(((((....)))))...))....))))))))).))))))).))))))..)))((((((((((.....)))))))))).))).))))))))...))))))))))))))).)))))).)).))))))))..))))))).).)))).))))

Structure
    g    g u       ca        g  -      a         g      --a       a g   ----------------------acua   cg      g       uuuuc         ----  ccc     g 
agua gagc c ucccugu  auauuaug cc gggauc uaaacaacu ucauau   ucucuua c uac                          ugu  aguucu uucaauu     auuuucuca    gu   uuauc a
|||| |||| | |||||||  |||||||| || |||||| ||||||||| ||||||   ||||||| | |||                          |||  |||||| |||||||     |||||||||    ||   |||||  
ucau cucg g agggaca  uauaGUAC GG CCCUAG GUUUGUUgg aguaua   agagagu g gug                          aca  ucaaga aaguuaa     uaaaagggu    cg   aauag u
    g    a u       ua        G  U      A         -      gac       - a   agucgcguuuggaaagcgaaugugac   cg      a       ----u         gaua  uuu     g 


Annotation confidence Not enough data
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Genome context
MA_10426486: 43979-44237 [-]

Database links

Mature pab-miR11577

Accession MIMAT0045189
Description Picea abies pab-miR11577 mature miRNA
Sequence 213 - UUGUUUGAGAUCCCUGGGCAUG - 234
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26318183
    Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
    "Xia R, Xu J, Arikit S, Meyers BC"
    "Mol Biol Evol (2015) 32:2905-2918