miRBase entry: pab-MIR11582

Stem-loop pab-MIR11582


Accession
MI0037096
Description
Picea abies pab-MIR11582 precursor miRNA


Sequence

cggcgauauggauuucaaguaUUUGUCCAACGUAAACGGCAacggauucuguauauauagaaaaauauauacaauuuguauacaucuacaucuauuucuauuguacauaaugcaugcagaggaagaguugccguuugcguuggacaaaauaucugagacccgaauaucaaacg
....(((((((.(((((.(((((((((((((((((((((((((...((((((((((((......))))))))..(((((((.(((.((((...........))))....))).)))))))))))..))))))))))))))))))).)))))).))))).))..))))).....

Structure
-cggc     --  a     a      -                   gga    guauauauagaaaaauauauacaa       a   ---c    ucua 
     gauau  gg uuuca guaUUU GUCCAACGUAAACGGCAac   uucu                        uuuguau cau    uaca    u
     |||||  || ||||| |||||| |||||||||||||||||||   ||||                        ||||||| |||    ||||    u
     cuaua  cc agagu uauaaa cagguugcguuugccguug   aagg                        agacgua gua    augu    u
gcaaa     ag  c     c      a                   -ag    ------------------------       c   auac    uauc 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
MA_497334: 4124-4296 [+]

Database links

Mature pab-miR11582

Accession MIMAT0045194
Description Picea abies pab-miR11582 mature miRNA
Sequence 22 - UUUGUCCAACGUAAACGGCA - 41
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26318183
    Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
    "Xia R, Xu J, Arikit S, Meyers BC"
    "Mol Biol Evol (2015) 32:2905-2918