Stem-loop sequence fhe-mir-2a

Accession

MI0037107 (change log)

Description

Fasciola hepatica miR-2a stem-loop

Literature search

1 open access papers mention fhe-mir-2a
(1 sentences)

Stem-loop

   ---ca      a       ga    -c g 
5'      gucaau cuggcug  ggca  c u
        |||||| |||||||  ||||  |  
3'      uaguua gaccgac  cugu  g a
   gcaag      a       -a    cu a 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Fhepatica_v1; GCA_000947175.1): scaffold879: 28178-28232 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from fhe-mir-2a

• fhe-mir-71a: scaffold879: 28077-28139 [+]
• fhe-mir-2a: scaffold879: 28178-28232 [+]
• fhe-mir-2b: scaffold879: 28276-28327 [+]
• fhe-mir-2e: scaffold879: 28368-28423 [+]

Database links

• miRBase Tracker:MI0037107

Mature sequence fhe-miR-2a

• Accession: MIMAT0045205
• Sequence: 33 - gucacagccagaauugaugaacg - 55
• Evidence: experimental; Illumina [1]

References

1. PMID:26432296 "The miRnome of Fasciola hepatica juveniles endorses the existence of a reduced set of highly divergent micro RNAs in parasitic flatworms" Fontenla S, Dell'Oca N, Smircich P, Tort JF, Siles-Lucas M Int J Parasitol. 45:901-913(2015).