Stem-loop sequence fhe-mir-2b

Accession

MI0037108 (change log)

Description

Fasciola hepatica miR-2b stem-loop

Literature search

1 open access papers mention fhe-mir-2b
(1 sentences)

Stem-loop

   --c    ---          c   -  g 
5'    cucg   gggguuguga aca ug c
      ||||   |||||||||| ||| ||  
3'    gggu   ucccgacacu ugu ac g
   aca    ucg          a   u  c 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Fhepatica_v1; GCA_000947175.1): scaffold879: 28276-28327 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from fhe-mir-2b

• fhe-mir-71a: scaffold879: 28077-28139 [+]
• fhe-mir-2a: scaffold879: 28178-28232 [+]
• fhe-mir-2b: scaffold879: 28276-28327 [+]
• fhe-mir-2e: scaffold879: 28368-28423 [+]

Database links

• miRBase Tracker:MI0037108

Mature sequence fhe-miR-2b

• Accession: MIMAT0045206
• Sequence: 30 - guaucacagcccugcuugggaca - 52
• Evidence: experimental; Illumina [1]

References

1. PMID:26432296 "The miRnome of Fasciola hepatica juveniles endorses the existence of a reduced set of highly divergent micro RNAs in parasitic flatworms" Fontenla S, Dell'Oca N, Smircich P, Tort JF, Siles-Lucas M Int J Parasitol. 45:901-913(2015).