Stem-loop sequence fhe-mir-2c

Accession

MI0037109 (change log)

Description

Fasciola hepatica miR-2c stem-loop

Literature search

1 open access papers mention fhe-mir-2c
(1 sentences)

Stem-loop

   -c     --c    a       u  cug 
5'   cccuu   cacg cugugau ug   u
     |||||   |||| ||||||| ||    
3'   gggaa   gugc gacacua ac   c
   uc     uuc    c       u  aca 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Fhepatica_v1; GCA_000947175.1): scaffold278: 636459-636513 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from fhe-mir-2c

• fhe-mir-71b: scaffold278: 635977-636066 [+]
• fhe-mir-2f: scaffold278: 636130-636246 [+]
• fhe-mir-2d: scaffold278: 636316-636415 [+]
• fhe-mir-2c: scaffold278: 636459-636513 [+]

Database links

• miRBase Tracker:MI0037109

Mature sequence fhe-miR-2c

• Accession: MIMAT0045207
• Sequence: 32 - auaucacagccgugcuuaagggcu - 55
• Evidence: experimental; Illumina [1]

References

1. PMID:26432296 "The miRnome of Fasciola hepatica juveniles endorses the existence of a reduced set of highly divergent micro RNAs in parasitic flatworms" Fontenla S, Dell'Oca N, Smircich P, Tort JF, Siles-Lucas M Int J Parasitol. 45:901-913(2015).