Stem-loop sequence fhe-mir-2f

Accession

MI0037112 (change log)

Description

Fasciola hepatica miR-2f stem-loop

Literature search

1 open access papers mention fhe-mir-2f
(1 sentences)

Stem-loop

   a         uc      g     cg    aacggguccacagcggaucaacacggcu 
5'  gguaucgau  uggcug gauag  aaga                            u
    |||||||||  |||||| |||||  ||||                             
3'  ccguaguua  accgac cuguc  uucu                            g
   -         ua      a     ca    gccaccguuuggcgcgacccuugccacg 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Fhepatica_v1; GCA_000947175.1): scaffold278: 636130-636246 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from fhe-mir-2f

• fhe-mir-71b: scaffold278: 635977-636066 [+]
• fhe-mir-2f: scaffold278: 636130-636246 [+]
• fhe-mir-2d: scaffold278: 636316-636415 [+]
• fhe-mir-2c: scaffold278: 636459-636513 [+]

Database links

• miRBase Tracker:MI0037112

Mature sequence fhe-miR-2f

• Accession: MIMAT0045210
• Sequence: 97 - gucacagccaauauugaugcc - 117
• Evidence: experimental; Illumina [1]

References

1. PMID:26432296 "The miRnome of Fasciola hepatica juveniles endorses the existence of a reduced set of highly divergent micro RNAs in parasitic flatworms" Fontenla S, Dell'Oca N, Smircich P, Tort JF, Siles-Lucas M Int J Parasitol. 45:901-913(2015).