miRBase entry: fhe-mir-2f

Stem-loop fhe-mir-2f


Accession
MI0037112
Description
Fasciola hepatica fhe-mir-2f precursor miRNA

Literature search
1 open access papers mention fhe-mir-2f
(1 sentences)

Sequence

agguaucgauucuggcugggauagcgaagaaacggguccacagcggaucaacacggcuuggcaccguucccagcgcgguuugccaccgucuuaccuGUCACAGCCAAUAUUGAUGCC
.(((((((((..((((((.(((((..((((....(((((.....)))))....(((..(((((((((.......)))))..)))))))))))..))))).))))))..)))))))))

Structure
a         uc      g     cg    aacggguccacagcggaucaaca   cu    --     uc 
 gguaucgau  uggcug gauag  aaga                       cgg  uggc  accgu  c
 |||||||||  |||||| |||||  ||||                       |||  ||||  |||||  c
 CCGUAGUUA  ACCGAC CUGuc  uucu                       gcc  accg  uggcg  a
-         UA      A     ca    -----------------------   --    uu     cg 


Annotation confidence Not enough data
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Genome context
scaffold278: 636130-636246 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from fhe-mir-2f
Name Accession Chromosome Start End Strand Confidence




Database links

Mature fhe-miR-2f

Accession MIMAT0045210
Description Fasciola hepatica fhe-miR-2f mature miRNA
Sequence 97 - GUCACAGCCAAUAUUGAUGCC - 117
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26432296
    The miRnome of Fasciola hepatica juveniles endorses the existence of a reduced set of highly divergent micro RNAs in parasitic flatworms
    "Fontenla S, Dell'Oca N, Smircich P, Tort JF, Siles-Lucas M"
    "Int J Parasitol (2015) 45:901-913