Stem-loop sequence fhe-mir-71a

Accession

MI0037120 (change log)

Description

Fasciola hepatica miR-71a stem-loop

Literature search

2 open access papers mention fhe-mir-71a
(3 sentences)

Stem-loop

   --u        au     u      caa    u 
5'    gaaagacg  gguag gagaug   aacg u
      ||||||||  ||||| ||||||   |||| u
3'    uuuucugc  ccauc cucuac   uugc g
   guc        -c     c      ---    c 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Fhepatica_v1; GCA_000947175.1): scaffold879: 28077-28139 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from fhe-mir-71a

• fhe-mir-71a: scaffold879: 28077-28139 [+]
• fhe-mir-2a: scaffold879: 28178-28232 [+]
• fhe-mir-2b: scaffold879: 28276-28327 [+]
• fhe-mir-2e: scaffold879: 28368-28423 [+]

Database links

• miRBase Tracker:MI0037120

Mature sequence fhe-miR-71a

• Accession: MIMAT0045218
• Sequence: 1 - ugaaagacgaugguagugagaug - 23
• Evidence: experimental; Illumina [1]

References

1. PMID:26432296 "The miRnome of Fasciola hepatica juveniles endorses the existence of a reduced set of highly divergent micro RNAs in parasitic flatworms" Fontenla S, Dell'Oca N, Smircich P, Tort JF, Siles-Lucas M Int J Parasitol. 45:901-913(2015).