miRBase entry: cas-MIR156c

Stem-loop cas-MIR156c


Accession
MI0037164
Description
Camelina sativa cas-MIR156c precursor miRNA

Literature search
1 open access papers mention cas-MIR156c
(4 sentences)

Sequence

gaaacUGACAGAAGAGAGUGAGCACacaaaggcacuuugcauguccgaugcuuuugcuucucuugcguGCUCACUGCUCUAUCUGUCAGAuuc
(((.(((((((((((((((((((((.((((((((....((((.....))))...)))))...))).))))))))).)))).)))))))).)))

Structure
   a        -    -         a   ---     cuuu    g 
gaa cUGACAGA AGAG AGUGAGCAC caa   aggca    gcau u
||| |||||||| |||| ||||||||| |||   |||||    |||| c
cuu GACUGUCU UCUC UCACUCGug guu   uucgu    cgua c
   A        A    G         c   cuc     -uuu    g 


Annotation confidence Not enough data
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Genome context
chr10: 4184127-4184219 [+]

Database links

Mature cas-miR156c-5p

Accession MIMAT0045268
Description Camelina sativa cas-miR156c-5p mature miRNA
Sequence 6 - UGACAGAAGAGAGUGAGCAC - 25
Evidence experimental
Illumina [1]

Mature cas-miR156c-3p

Accession MIMAT0045269
Description Camelina sativa cas-miR156c-3p mature miRNA
Sequence 69 - GCUCACUGCUCUAUCUGUCAGA - 90
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25826400
    Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
    Poudel S, Aryal N, Lu C
    PLoS One (2015) 10:e0121542