miRBase entry: cas-MIR156d

Stem-loop cas-MIR156d


Accession
MI0037165
Description
Camelina sativa cas-MIR156d precursor miRNA

Literature search
1 open access papers mention cas-MIR156d
(4 sentences)

Sequence

agaaguUGACAGAAGAGAGUGAGCACacaaaggggaaguuguauaaacuuuuuguauaugguuugcuuuugcguGCUCACUCUCUUUCUGUCAUAacuucu
((((((((((((((((((((((((((.((((((.(((.(((((((((...)))))))).).))).)))))).)))))))))))).))))))))..))))))

Structure
      --        -            a      g   g -        c 
agaagu  UGACAGAA GAGAGUGAGCAC caaagg gaa u uguauaaa  
||||||  |||||||| |||||||||||| |||||| ||| | |||||||| u
ucuuca  ACUGUCUU CUCUCACUCGug guuuuc uuu g auauguuu  
      AU        U            c      g   g u        u 


Annotation confidence Not enough data
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Genome context
chr13: 4416556-4416656 [-]

Database links

Mature cas-miR156d-5p

Accession MIMAT0045270
Description Camelina sativa cas-miR156d-5p mature miRNA
Sequence 7 - UGACAGAAGAGAGUGAGCAC - 26
Evidence experimental
Illumina [1]

Mature cas-miR156d-3p

Accession MIMAT0045271
Description Camelina sativa cas-miR156d-3p mature miRNA
Sequence 75 - GCUCACUCUCUUUCUGUCAUA - 95
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25826400
    Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
    Poudel S, Aryal N, Lu C
    PLoS One (2015) 10:e0121542