miRBase entry: cas-MIR156i

Stem-loop cas-MIR156i


Accession
MI0037170
Description
Camelina sativa cas-MIR156i precursor miRNA

Literature search
1 open access papers mention cas-MIR156i
(4 sentences)

Sequence

ggaggaugaCAGAAGAGAGAGAGCACAAUcagagucauggaugcaacucgucauucucucacacaacgaugcuguucucgagcuuucuucuucuucu
((((((.((..((((...(((((((..(((((((.....((((.....))))...))))........)))..)))))))...))))..)).))))))

Structure
      u  CA    AGA       CA   --------    ucaug    c 
ggagga ga  GAAG   GAGAGCA  AUc        agag     gaug a
|||||| ||  ||||   |||||||  |||        ||||     |||| a
ucuucu cu  uuuc   cucuugu  uag        ucuc     cugc c
      u  uc    gag       cg   caacacac    --uua    u 


Annotation confidence Not enough data
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Genome context
chr2: 15182645-15182741 [+]

Database links

Mature cas-miR156i

Accession MIMAT0045278
Description Camelina sativa cas-miR156i mature miRNA
Sequence 10 - CAGAAGAGAGAGAGCACAAU - 29
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25826400
    Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
    Poudel S, Aryal N, Lu C
    PLoS One (2015) 10:e0121542